PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056523-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 70aa    MW: 8119.55 Da    PI: 11.2483
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056523-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-097302246
                      T-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                       +W+ Ia+ ++ gRt++++k++w++
  PSME_00056523-RA  7 CRWSIIAAQLP-GRTDNDIKNHWNT 30
                      57*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.927136IPR017930Myb domain
CDDcd001672.80E-6330No hitNo description
PfamPF002492.2E-7730IPR001005SANT/Myb domain
SuperFamilySSF466895.93E-9737IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-12736IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MTLLPLCRWS IIAAQLPGRT DNDIKNHWNT RLKKKLLGKR KDHKTSRLAV VRQEKKDVRS  60
NTCFANMGNC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070175.11e-18PREDICTED: transcription factor RAX2-like
TrEMBLD5ABB64e-21D5ABB6_PICSI; Putative uncharacterized protein
STRINGPOPTR_0007s14630.15e-17(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.15e-11myb domain protein 68